Biomedical Natural Language Processing

| University of Colorado, School of Medicine
| National Library of Medicine
HardboundAvailable
ISBN 9789027249975 | EUR 95.00 | USD 143.00
 
PaperbackAvailable
ISBN 9789027249982 | EUR 33.00 | USD 49.95
 
e-Book
ISBN 9789027271068 | EUR 95.00/33.00*
| USD 143.00/49.95*
 
Biomedical Natural Language Processing is a comprehensive tour through the classic and current work in the field. It discusses all subjects from both a rule-based and a machine learning approach, and also describes each subject from the perspective of both biological science and clinical medicine. The intended audience is readers who already have a background in natural language processing, but a clear introduction makes it accessible to readers from the fields of bioinformatics and computational biology, as well. The book is suitable as a reference, as well as a text for advanced courses in biomedical natural language processing and text mining.
[Natural Language Processing, 11]  2014.  xi, 160 pp.
Publishing status: Available
Table of Contents
“[...] impressive book.”
“[…] the perfect resource especially for new NLP investigators. It is an easy read, quite insightful, and filled with lots of valuable “between the studies” truisms.”
“I enjoyed reading the book!”
“[…] a great job of distilling a huge amount of work!”
“This looks like a great book and I am looking forward to seeing it published!”
Cited by

Cited by 37 other publications

Aftab, Wasim & Axel Imhof
2021.  In Separation Techniques Applied to Omics Sciences [Advances in Experimental Medicine and Biology, 1336],  pp. 105 ff. Crossref logo
Bada, Michael, Vasilevsky, Nicole, Baumgartner, William A, Haendel, Melissa & Hunter, Lawrence E
2017. Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database 2017 Crossref logo
Blanco, Alberto, Arantza Casillas, Alicia Pérez & Arantza Diaz de Ilarraza
2019. Multi-label clinical document classification: Impact of label-density. Expert Systems with Applications 138  pp. 112835 ff. Crossref logo
Botsis, Taxiarchis, Christopher Jankosky, Deepa Arya, Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Wei Wang, Guangfan Zhang, Richard Forshee, Ravi Goud, David Menschik, Mark Walderhaug, Emily Jane Woo & John Scott
2016. Decision support environment for medical product safety surveillance. Journal of Biomedical Informatics 64  pp. 354 ff. Crossref logo
Campillos, Leonardo, Louise Deléger, Cyril Grouin, Thierry Hamon, Anne-Laure Ligozat & Aurélie Névéol
2018. A French clinical corpus with comprehensive semantic annotations: development of the Medical Entity and Relation LIMSI annOtated Text corpus (MERLOT). Language Resources and Evaluation 52:2  pp. 571 ff. Crossref logo
Casillas, Arantza, Koldo Gojenola, Alicia Perez & Maite Oronoz
2016.  In 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM),  pp. 946 ff. Crossref logo
Chen, Elizabeth S.
2021.  In Mental Health Informatics [Health Informatics, ],  pp. 31 ff. Crossref logo
Dalianis, Hercules
2018.  In Clinical Text Mining,  pp. 1 ff. Crossref logo
de Oliveira, Lucas Ferro Antunes, Adriana Pagano, Lucas Emanuel Silva e Oliveira & Claudia Moro
2022.  In Computational Processing of the Portuguese Language [Lecture Notes in Computer Science, 13208],  pp. 90 ff. Crossref logo
Deléger, Louise, Leonardo Campillos, Anne-Laure Ligozat & Aurélie Névéol
2017. Design of an extensive information representation scheme for clinical narratives. Journal of Biomedical Semantics 8:1 Crossref logo
Erekhinskaya, Tatiana, Mithun Balakrishna, Marta Tatu, Steven Werner & Dan Moldovan
2016.  In Proceedings of the 16th ACM/IEEE-CS on Joint Conference on Digital Libraries,  pp. 221 ff. Crossref logo
Green, Nancy L.
2015.  In 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM),  pp. 922 ff. Crossref logo
Hakimi, Osnat, Josep Luis Gelpi, Martin Krallinger, Fabio Curi, Dmitry Repchevsky & Maria‐Pau Ginebra
2020. The Devices, Experimental Scaffolds, and Biomaterials Ontology (DEB): A Tool for Mapping, Annotation, and Analysis of Biomaterials Data. Advanced Functional Materials 30:16  pp. 1909910 ff. Crossref logo
Hersh, William
2020.  In Information Retrieval: A Biomedical and Health Perspective [Health Informatics, ],  pp. 1 ff. Crossref logo
Hersh, William
2021.  In Biomedical Informatics,  pp. 755 ff. Crossref logo
Kilicoglu, Halil, Asma Ben Abacha, Yassine Mrabet, Sonya E. Shooshan, Laritza Rodriguez, Kate Masterton & Dina Demner-Fushman
2018. Semantic annotation of consumer health questions. BMC Bioinformatics 19:1 Crossref logo
Kim, Jin-Dong, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J Callahan, K Bretonnel Cohen & Jonathan Wren
2019. Open Agile text mining for bioinformatics: the PubAnnotation ecosystem. Bioinformatics 35:21  pp. 4372 ff. Crossref logo
Leaman, Robert, Ritu Khare & Zhiyong Lu
2015. Challenges in clinical natural language processing for automated disorder normalization. Journal of Biomedical Informatics 57  pp. 28 ff. Crossref logo
Li, Qi, Xuan Wang, Yu Zhang, Fei Ling, Cathy H. Wu & Jiawei Han
2018.  In 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM),  pp. 420 ff. Crossref logo
Luo, Yuan, William K. Thompson, Timothy M. Herr, Zexian Zeng, Mark A. Berendsen, Siddhartha R. Jonnalagadda, Matthew B. Carson & Justin Starren
2017. Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review. Drug Safety 40:11  pp. 1075 ff. Crossref logo
Luo, Yuan, Özlem Uzuner & Peter Szolovits
2017. Bridging semantics and syntax with graph algorithms—state-of-the-art of extracting biomedical relations. Briefings in Bioinformatics 18:1  pp. 160 ff. Crossref logo
Navathe, Amol S., Feiran Zhong, Victor J. Lei, Frank Y. Chang, Margarita Sordo, Maxim Topaz, Shamkant B. Navathe, Roberto A. Rocha & Li Zhou
2018. Hospital Readmission and Social Risk Factors Identified from Physician Notes. Health Services Research 53:2  pp. 1110 ff. Crossref logo
Nikolova, Ivelina, Svetla Boytcheva, Galia Angelova & Zhivko Angelov
2016.  In Artificial Intelligence: Methodology, Systems, and Applications [Lecture Notes in Computer Science, 9883],  pp. 57 ff. Crossref logo
Oliveira, Lucas Emanuel Silva e, Ana Carolina Peters, Adalniza Moura Pucca da Silva, Caroline Pilatti Gebeluca, Yohan Bonescki Gumiel, Lilian Mie Mukai Cintho, Deborah Ribeiro Carvalho, Sadid Al Hasan & Claudia Maria Cabral Moro
2022. SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks. Journal of Biomedical Semantics 13:1 Crossref logo
Pesaranghader, Ahmad, Stan Matwin, Marina Sokolova & Ali Pesaranghader
2019. deepBioWSD: effective deep neural word sense disambiguation of biomedical text data. Journal of the American Medical Informatics Association 26:5  pp. 438 ff. Crossref logo
Pérez, Alicia, Rebecka Weegar, Arantza Casillas, Koldo Gojenola, Maite Oronoz & Hercules Dalianis
2017. Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora. Journal of Biomedical Informatics 71  pp. 16 ff. Crossref logo
Bastien Rance, Canuel, Vincent, Countouris, Hector, Laurent-Puig, Pierre & Burgun, Anita
2016. Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure. Applied Clinical Informatics 07:02  pp. 260 ff. Crossref logo
Sakhaee, Neda & Mark C. Wilson
2021. Information extraction framework to build legislation network. Artificial Intelligence and Law 29:1  pp. 35 ff. Crossref logo
Santiso, Sara, Arantza Casillas, Alicia Pérez & Maite Oronoz
2017.  In Bioinformatics and Biomedical Engineering [Lecture Notes in Computer Science, 10208],  pp. 177 ff. Crossref logo
Santiso, Sara, Arantza Casillas & Alicia Pérez
2019. The class imbalance problem detecting adverse drug reactions in electronic health records. Health Informatics Journal 25:4  pp. 1768 ff. Crossref logo
Santiso, Sara, Alicia Pérez, Arantza Casillas & Maite Oronoz
2020. Neural negated entity recognition in Spanish electronic health records. Journal of Biomedical Informatics 105  pp. 103419 ff. Crossref logo
Shatkay, Hagit
2019.  In Encyclopedia of Bioinformatics and Computational Biology,  pp. 1099 ff. Crossref logo
Valenzuela-Escárcega, Marco A, Özgün Babur, Gus Hahn-Powell, Dane Bell, Thomas Hicks, Enrique Noriega-Atala, Xia Wang, Mihai Surdeanu, Emek Demir & Clayton T Morrison
2018. Large-scale automated machine reading discovers new cancer-driving mechanisms. Database 2018 Crossref logo
Wang, Xuan, Yu Zhang, Qi Li, Yinyin Chen & Jiawei Han
2018.  In Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics,  pp. 291 ff. Crossref logo
Weissman, Gary E., Michael O. Harhay, Ricardo M. Lugo, Barry D. Fuchs, Scott D. Halpern & Mark E. Mikkelsen
2016. Natural Language Processing to Assess Documentation of Features of Critical Illness in Discharge Documents of Acute Respiratory Distress Syndrome Survivors. Annals of the American Thoracic Society 13:9  pp. 1538 ff. Crossref logo
Zheng, Chengyi, Jonathan Duffy, In-Lu Amy Liu, Lina S Sy, Ronald A Navarro, Sunhea S Kim, Denison S Ryan, Wansu Chen, Lei Qian, Cheryl Mercado & Steven J Jacobsen
2022. Identifying Cases of Shoulder Injury Related to Vaccine Administration (SIRVA) in the United States: Development and Validation of a Natural Language Processing Method. JMIR Public Health and Surveillance 8:5  pp. e30426 ff. Crossref logo
Zhu, Hongyin, Yi Zeng, Dongsheng Wang & Cunqing Huangfu
2020. Species Classification for Neuroscience Literature Based on Span of Interest Using Sequence-to-Sequence Learning Model. Frontiers in Human Neuroscience 14 Crossref logo

This list is based on CrossRef data as of 02 august 2022. Please note that it may not be complete. Sources presented here have been supplied by the respective publishers. Any errors therein should be reported to them.

Subjects & Metadata
BIC Subject: CFX – Computational linguistics
BISAC Subject: LAN009000 – LANGUAGE ARTS & DISCIPLINES / Linguistics / General
ONIX Metadata
ONIX 2.1
ONIX 3.0
U.S. Library of Congress Control Number:  2013029704 | Marc record